GlycoProtDB ID - GPDB0001368


Protein Name Antigen-presenting glycoprotein CD1d1
Protein Accession Number A0A0R4J090
Gene Cd1d1
Length 336
Status
release : 2016-12-05

Glycosylation Sites

Schema of N-glycosylation site(s) of the protein

Sequence

(__:Potential Sequon , N:Identified Site)

1
101
201
301
MRYLPWLLLW AFLQVWGQSE AQQKNYTFRC LQMSSFANRS WSRTDSVVWL GDLQTHRWSN DSATISFTKP WSQGKLSNQQ WEKLQHMFQV YRVSFTRDIQ
ELVKMMSPKE DYPIEIQLSA GCEMYPGNAS ESFLHVAFQG KYVVRFWGTS WQTVPGAPSW LDLPIKVLNA DQGTSATVQM LLNDTCPLFV RGLLEAGKSD
LEKQEKPVAW LSSVPSSAHG HRQLVCHVSG FYPKPVWVMW MRGDQEQQGT HRGDFLPNAD ETWYLQATLD VEAGEEAGLA CRVKHSSLGG QDIILYWDAR
QAPVGLIVFI VLIMLVVVGA VVYYIWRRRS AYQDIR

N-glycosylation sites

Potential sites Identified Peptide*1
Position Sequon Position Sequence Unique or Shared
25 NYT
38 NRS 30 - 39
CLQMSSFANR
Shared ( 4 )
30 - 39
CLQMSSFANR
Shared ( 4 )
60 NDS 58 - 75
WSNDSATISFTKPWSQGK
Shared ( 3 )
128 NAS
183 NDT 167 - 191
VLNADQGTSATVQMLLNDTCPLFVR
Shared ( 2 )
167 - 191
VLNADQGTSATVQMLLNDTCPLFVR
Shared ( 2 )
Brain Kidney Liver Liver: b4GalT-I(+/+) Liver: b4GalT-I(-/-) Lung
ConA ConA ConA RCA120 SSA RCA120 RCA120 ConA
               
 
 
 
 
 
 
               
     
 
 
     
       
*1:   _:Potential Sequon     :Asn (glycosylated)     :Gln (deaminated:pyroGlu)     :Met (oxidized)     :Cys (carbamidomethylated and deaminated)

External Links

Publications

Sugahara D, Kaji H, Sugihara K, Asano M, Narimatsu H Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach Sci Rep 2012;2(): PMID:23002422
Kaji H, Shikanai T, Sasaki-Sawa A, et al Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB J Proteome Res 2012;11(9):4553-4566 PMID:22823882
Kaji H, Yamauchi Y, Takahashi N, Isobe T Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site--specific stable isotope tagging Nat Protocols 2007;1(6):3019-3027 PMID:17406563

Entry information

Entry version 2016-12-05
protein sequence version 2016-12-05
Entry status Latest version
Entry history

create : 2016-12-05