GlycoProtDB ID - GPDB0002174


Protein Name CSC1-like protein 2 (Fragment)
Protein Accession Number D3Z0P2
Gene Tmem63b
Length 218
Status
release : 2016-12-05

Glycosylation Sites

Schema of N-glycosylation site(s) of the protein

Sequence

(__:Potential Sequon , N:Identified Site)

1
101
201
MLPFLLATLG TAALNSSNPK DYCYSARIRS TVLQGLPFGG VPTVLALDFM CFLALLFLFS ILRKVAWDYG RLALVTDADS VASAMHGDSH DRYERLTSVS
SSVDFDQRDN GFCSWLTAIF RIKDDEIRDK CGGDAVHYLS FQRHIIGLLV VVGVLSVGIV LPVNFSGDLL ENNAYSFGRT TIANLKSGNN LLWLHTSFAF
LYLLLTVYSM RRHTSKMR

N-glycosylation sites

Potential sites Identified Peptide*1
Position Sequon Position Sequence Unique or Shared
15 NSS 1 - 20
MLPFLLATLGTAALNSSNPK
Shared ( 6 )
8 - 20
TLGTAALNSSNPK
Shared ( 6 )
1 - 20
MLPFLLATLGTAALNSSNPK
Shared ( 6 )
164 NFS
Brain Colon Heart Kidney(Fut9 WT) Liver: b4GalT-I(+/+) Liver: b4GalT-I(-/-) Stomach
ConA Amide80 Amide80 AAL(+) RCA120 RCA120 Amide80
     
 
     
     
 
     
             
*1:   _:Potential Sequon     :Asn (glycosylated)     :Gln (deaminated:pyroGlu)     :Met (oxidized)     :Cys (carbamidomethylated and deaminated)

External Links

Publications

Noro E, Togayachi A, Sato T, Tomioka A, Fujita M, Sukegawa M, Suzuki N, Kaji H, Narimatsu H Large-Scale Identification of N-Glycan Glycoproteins Carrying Lewis x and Site-Specific N-Glycan Alterations in Fut9 Knockout Mice. J Proteome Res 2015;14(9):3823-34 PMID:26244810
Sugahara D, Kaji H, Sugihara K, Asano M, Narimatsu H Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach Sci Rep 2012;2(): PMID:23002422
Kaji H, Shikanai T, Sasaki-Sawa A, et al Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB J Proteome Res 2012;11(9):4553-4566 PMID:22823882
Kaji H, Yamauchi Y, Takahashi N, Isobe T Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site--specific stable isotope tagging Nat Protocols 2007;1(6):3019-3027 PMID:17406563

Entry information

Entry version 2016-12-05
protein sequence version 2016-12-05
Entry status Latest version
Entry history

create : 2016-12-05