GlycoProtDB ID - GPDB0002194


Protein Name CSC1-like protein 2 (Fragment)
Protein Accession Number D3Z2D8
Gene Tmem63b
Length 309
Status
release : 2016-12-05

Glycosylation Sites

Schema of N-glycosylation site(s) of the protein

Sequence

(__:Potential Sequon , N:Identified Site)

1
101
201
301
MLPFLLATLG TAALNSSNPK DYCYSARIRS TVLQGLPFGG VPTVLALDFM CFLALLFLFS ILRKVAWDYG RLALVTDADS VASAMHGDSH DRYERLTSVS
SSVDFDQRDN GFCSWLTAIF RIKDDEIRDK CGGDAVHYLS FQRHIIGLLV VVGVLSVGIV LPVNFSGDLL ENNAYSFGRT TIANLKSGNN LLWLHTSFAF
LYLLLTVYSM RRHTSKMRYK EDDLVKRTLF INGISKYAES EKIKKHFEEA YPNCTVLEAR PCYNVARLMF LDAERKKAER GKLYFTNLQS KENVPAMINP
KPCGHLCCC

N-glycosylation sites

Potential sites Identified Peptide*1
Position Sequon Position Sequence Unique or Shared
15 NSS 1 - 20
MLPFLLATLGTAALNSSNPK
Shared ( 6 )
8 - 20
TLGTAALNSSNPK
Shared ( 6 )
1 - 20
MLPFLLATLGTAALNSSNPK
Shared ( 6 )
164 NFS
253 NCT
Brain Colon Heart Kidney(Fut9 WT) Liver: b4GalT-I(+/+) Liver: b4GalT-I(-/-) Stomach
ConA Amide80 Amide80 AAL(+) RCA120 RCA120 Amide80
     
 
     
     
 
     
             
             
*1:   _:Potential Sequon     :Asn (glycosylated)     :Gln (deaminated:pyroGlu)     :Met (oxidized)     :Cys (carbamidomethylated and deaminated)

External Links

Publications

Noro E, Togayachi A, Sato T, Tomioka A, Fujita M, Sukegawa M, Suzuki N, Kaji H, Narimatsu H Large-Scale Identification of N-Glycan Glycoproteins Carrying Lewis x and Site-Specific N-Glycan Alterations in Fut9 Knockout Mice. J Proteome Res 2015;14(9):3823-34 PMID:26244810
Sugahara D, Kaji H, Sugihara K, Asano M, Narimatsu H Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach Sci Rep 2012;2(): PMID:23002422
Kaji H, Shikanai T, Sasaki-Sawa A, et al Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB J Proteome Res 2012;11(9):4553-4566 PMID:22823882
Kaji H, Yamauchi Y, Takahashi N, Isobe T Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site--specific stable isotope tagging Nat Protocols 2007;1(6):3019-3027 PMID:17406563

Entry information

Entry version 2016-12-05
protein sequence version 2016-12-05
Entry status Latest version
Entry history

create : 2016-12-05