GlycoProtDB ID - GPDB0002761


Protein Name Apolipoprotein B-100 (Fragment)
Protein Accession Number F7A3M3
Gene Apob
Length 411
Status
release : 2016-12-05

Glycosylation Sites

Schema of N-glycosylation site(s) of the protein

Sequence

(__:Potential Sequon , N:Identified Site)

1
101
201
301
401
EVILKANTKN QKISWKGGVQ VESRVLQHNA QFSNDQEEIR LDLAGSLDGQ LWDLEAIFLP VYGKSLQELL QMDGKRQYLQ ASTSLLYTKN PNGYLLSLPV
QELADRFIIP GIKLNDFSGV KIYKKLSTSP FALNLTMLPK VKFPGIDLLT QYSTPEGSSV PIFEATIPEI HLTVSQFTLP KSLPVGNTVF DLNKLANMIA
DVDLPSVTLP EQTIVIPPLE FSVPAGIFIP FFGELTARAG MASPLYNVTW SAGWKTKADH VETFLDSMCT STLQFLEYAL KVVETHKIEE DLLTYNIKGT
LQHCDFNVEY NEDGLFKGLW DWQGEAHLDI TSPALTDFHL YYKEDKTSLS ASAASSTIGT VGLDSSTDDQ SVELNVYFHP QSPPEKKLSI FKTEWRYKES
DGERSHMLLN P

N-glycosylation sites

Potential sites Identified Peptide*1
Position Sequon Position Sequence Unique or Shared
134 NLT 125 - 140
KLSTSPFALNLTMLPK
Shared ( 3 )
126 - 140
LSTSPFALNLTMLPK
Shared ( 3 )
126 - 140
LSTSPFALNLTMLPK
Shared ( 3 )
125 - 140
KLSTSPFALNLTMLPK
Shared ( 3 )
247 NVT 239 - 255
AGMASPLYNVTWSAGWK
Shared ( 3 )
239 - 255
AGMASPLYNVTWSAGWK
Shared ( 3 )
Kidney Liver Liver: b4GalT-I(+/+) Lung Serum
RCA120 ConA RCA120 RCA120 RCA120 Amide80
   
     
 
 
 
 
         
 
     
   
     
*1:   _:Potential Sequon     :Asn (glycosylated)     :Gln (deaminated:pyroGlu)     :Met (oxidized)     :Cys (carbamidomethylated and deaminated)

External Links

Publications

Sugahara D, Kaji H, Sugihara K, Asano M, Narimatsu H Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach Sci Rep 2012;2(): PMID:23002422
Kaji H, Shikanai T, Sasaki-Sawa A, et al Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB J Proteome Res 2012;11(9):4553-4566 PMID:22823882
Kaji H, Yamauchi Y, Takahashi N, Isobe T Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site--specific stable isotope tagging Nat Protocols 2007;1(6):3019-3027 PMID:17406563

Entry information

Entry version 2016-12-05
protein sequence version 2016-12-05
Entry status Latest version
Entry history

create : 2016-12-05