GlycoProtDB ID - GPDB0003700


Protein Name Cadherin-5
Protein Accession Number P55284
Gene Cdh5
Length 784
Status
Reviewed
release : 2016-12-05

Glycosylation Sites

Schema of N-glycosylation site(s) of the protein

Sequence

(__:Potential Sequon , N:Identified Site)

1
101
201
301
401
501
601
701
MQRLTELATA LGAFLGLLAV AAMAGPNFPQ IDTPNMLPAH HRQKRDWIWN QMHIDEEKNE SLPHYVGKIK SNVNRQNAKY VLQGEFAGKI FGVDANTGNV
LAYERLDREK VSEYFLTALI VDKNTNKNLE QPSSFTVKVH DINDNWPVFS HQVFNASVPE MSAIGTSVIR VTAVDADDPT VAGHATVLYQ IVKGNEYFSI
DNSGLIFTKI KNLDREKQAE YKIVVETQDA LGLRGESGTA TVMIRLEDIN DNFPVFTQST YTFSVPEDIR VGKPLGFLTV VDPDEPQNRM TKYSIMQGEY
RDTFTIETDP KRNEGIIKPT KSLDYEVIQQ YTFYIEATDP TIRYEYLSST SGKNKAMVTI NVLDVDEPPV FQRHFYHFKL PENQKKPLIG TVVAKDPDKA
QRSIGYSIRK TSDRGQFFRI TKQGNIYNEK ELDRETYAWY NLTVEANELD SRGNPVGKES IVQVYIEVLD ENDNPPEFAQ PYEPKVCENA AQGKLVVQIS
ATDKDVVPVN PKFKFALKNE DSNFTLINNH DNTANITVKY GQFNREHAKF HYLPVLISDN GVPSLTGTST LTVGVCKCNE QGEFTFCEEM AAQAGVSIQA
LVAIFLCILT ITVITLLIIL RRRIRKQAHA HSKSALEIHE QLVTYDEEGG GEMDTTSYDV SVLNSVRGGS TKPLRSTMDA RPAVYTQVQK PPRLAPGLHG
GPREMATMID VKKEEADNDG GGPPYDTLHI YGYEGAESIA ESLSSLSTNS SDSDIDYDFL NDWGPRFKML AELYGSDPQE ELII

N-glycosylation sites

Potential sites Identified Peptide*1
Position Sequon Position Sequence Unique or Shared
59 NES
155 NAS
441 NLT 431 - 452
ELDRETYAWYNLTVEANELDSR
Shared ( 2 )
431 - 458
ELDRETYAWYNLTVEANELDSRGNPVGK
Shared ( 2 )
523 NFT 515 - 539
FALKNEDSNFTLINNHDNTANITVK
Shared ( 2 )
519 - 539
NEDSNFTLINNHDNTANITVK
Shared ( 2 )
535 NIT 515 - 539
FALKNEDSNFTLINNHDNTANITVK
Shared ( 2 )
519 - 539
NEDSNFTLINNHDNTANITVK
Shared ( 2 )
749 NSS
Colon Heart Kidney(Fut9 KO) Kidney(Fut9 WT) Liver Liver: b4GalT-I(+/+) Liver: b4GalT-I(-/-) Lung Serum Skeletal_muscle Stomach
ConA RCA120 Amide80 ConA RCA120 AAL(+) AAL(+) RCA120 RCA120 RCA120 ConA Amide80 Amide80 ConA RCA120 Amide80 ConA RCA120
                                   
                                   
         
                       
         
                     
                   
           
   
 
                   
           
   
 
                                   
*1:   _:Potential Sequon     :Asn (glycosylated)     :Gln (deaminated:pyroGlu)     :Met (oxidized)     :Cys (carbamidomethylated and deaminated)

External Links

Publications

Noro E, Togayachi A, Sato T, Tomioka A, Fujita M, Sukegawa M, Suzuki N, Kaji H, Narimatsu H Large-Scale Identification of N-Glycan Glycoproteins Carrying Lewis x and Site-Specific N-Glycan Alterations in Fut9 Knockout Mice. J Proteome Res 2015;14(9):3823-34 PMID:26244810
Sugahara D, Kaji H, Sugihara K, Asano M, Narimatsu H Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach Sci Rep 2012;2(): PMID:23002422
Kaji H, Shikanai T, Sasaki-Sawa A, et al Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB J Proteome Res 2012;11(9):4553-4566 PMID:22823882
Kaji H, Yamauchi Y, Takahashi N, Isobe T Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site--specific stable isotope tagging Nat Protocols 2007;1(6):3019-3027 PMID:17406563

Entry information

Entry version 2016-12-05
protein sequence version 2016-12-05
Entry status Latest version
Entry history

create : 2016-12-05