GlycoProtDB ID - GPDB0006979


Protein Name Cadherin 13
Protein Accession Number Q8VDK4
Gene Cdh13
Length 714
Status
release : 2016-12-05

Glycosylation Sites

Schema of N-glycosylation site(s) of the protein

Sequence

(__:Potential Sequon , N:Identified Site)

1
101
201
301
401
501
601
701
MQPRTPLTLC VLLSQVLLVT SADDLECTPG FQQKVLHIHQ PAEFIEDQPV LNLTFSDCKG NEKLHYEVSS PHFKVNSDGT LVALRNITAV GRTLFVHART
PHAEDMAELV IVGGKDIQGS LQDIFKFART SPVPRQKRSI VVSPILIPEN QRQPFPRDVG KVVDSDRPEG SKFRLTGKGV DQDPKGTFRI NENTGSVSVT
RTLDRETIAT YQLYVETTDA SGKTLEGPVP LEVIVIDQND NRPIFREGPY IGHVMEGSPT GTTVMRMTAF DADDPATDNA LLRYNIRQQT PDKPSPNMFY
IDPEKGDIVT VVSPALLDRE TLENPKYELI IEAQDMAGLD VGLTGTATAT IVIDDKNDHS PKFTKKEFQA TVEEGAVGVI VNLTVEDKDD PTTGAWRAAY
TIINGNPGQS FEIHTNPQTN EGMLSVVKPL DYEISAFHTL LIKVENEDPL VPDVSYGPSS TATVHITVLD VNEGPVFYPD PMMVTKQENI SVGSVLLTVN
AT
DPDSLQHQ TIRYSVYKDP AGWLSINPIN GTVDTTAVLD RESPFVHNSV YTALFLAIDS GNPPATGTGT LLITLEDIND NAPVIYPTVA EVCDDARNLS
VVILGASDKD LHPNTDPFKF EIHKQTVPDK VWKISKINNT HALVSLLQNL NKANYNLPIM VTDSGKPPMT NITDLRVQVC SCKNSKVDCN GAGALHLSLS
LLLLFSLLSL LSGL

N-glycosylation sites

Potential sites Identified Peptide*1
Position Sequon Position Sequence Unique or Shared
52 NLT
86 NIT 75 - 92
VNSDGTLVALRNITAVGR
Shared ( 4 )
382 NLT
489 NIS 487 - 513
QENISVGSVLLTVNATDPDSLQHQTIR
Shared ( 3 )
487 - 513
QENISVGSVLLTVNATDPDSLQHQTIR
Shared ( 3 )
500 NAT 487 - 513
QENISVGSVLLTVNATDPDSLQHQTIR
Shared ( 3 )
487 - 513
QENISVGSVLLTVNATDPDSLQHQTIR
Shared ( 3 )
530 NGT
598 NLS
638 NNT 634 - 652
ISKINNTHALVSLLQNLNK
Shared ( 3 )
637 - 652
INNTHALVSLLQNLNK
Shared ( 3 )
671 NIT 653 - 676
ANYNLPIMVTDSGKPPMTNITDLR
Shared ( 3 )
653 - 676
ANYNLPIMVTDSGKPPMTNITDLR
Shared ( 3 )
653 - 676
ANYNLPIMVTDSGKPPMTNITDLR
Shared ( 3 )
653 - 676
ANYNLPIMVTDSGKPPMTNITDLR
Shared ( 3 )
Brain Colon Heart Kidney Kidney(Fut9 KO) Kidney(Fut9 WT) Liver Liver: b4GalT-I(+/+) Liver: b4GalT-I(-/-) Lung Skeletal_muscle Stomach Testis
AAL ConA RCA120 Amide80 ConA RCA120 Amide80 ConA RCA120 RCA120 AAL(+) AAL(+) AAL ConA RCA120 SSA WGA RCA120 RCA120 ConA RCA120 Amide80 ConA RCA120 Amide80 ConA RCA120 ConA
                                                       
         
           
     
 
 
                                                       
   
 
 
       
 
   
       
 
 
                   
 
 
   
 
 
       
 
   
       
 
 
                   
 
 
                                                       
                                                       
 
                 
 
       
             
 
     
 
     
         
 
       
             
       
               
           
                       
               
                                     
               
 
                                                   
*1:   _:Potential Sequon     :Asn (glycosylated)     :Gln (deaminated:pyroGlu)     :Met (oxidized)     :Cys (carbamidomethylated and deaminated)

External Links

Publications

Noro E, Togayachi A, Sato T, Tomioka A, Fujita M, Sukegawa M, Suzuki N, Kaji H, Narimatsu H Large-Scale Identification of N-Glycan Glycoproteins Carrying Lewis x and Site-Specific N-Glycan Alterations in Fut9 Knockout Mice. J Proteome Res 2015;14(9):3823-34 PMID:26244810
Sugahara D, Kaji H, Sugihara K, Asano M, Narimatsu H Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach Sci Rep 2012;2(): PMID:23002422
Kaji H, Shikanai T, Sasaki-Sawa A, et al Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB J Proteome Res 2012;11(9):4553-4566 PMID:22823882
Kaji H, Yamauchi Y, Takahashi N, Isobe T Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site--specific stable isotope tagging Nat Protocols 2007;1(6):3019-3027 PMID:17406563

Entry information

Entry version 2016-12-05
protein sequence version 2016-12-05
Entry status Latest version
Entry history

create : 2016-12-05