GlycoProtDB ID - GPDB0007599


Protein Name C-type lectin domain family 1 member B
Protein Accession Number Q9JL99
Gene Clec1b
Length 229
Status
Reviewed
release : 2016-12-05

Glycosylation Sites

Schema of N-glycosylation site(s) of the protein

Sequence

(__:Potential Sequon , N:Identified Site)

1
101
201
MQDEDGYITL NIKPRKQALS SAEPASSWWR VMALVLLISS MGLVVGLVAL GIMSVTQQKY LLAEKENLSA TLQQLAKKFC QELIRQSEIK TKSTFEHKCS
PCATKWRYHG DSCYGFFRRN LTWEESKQYC TEQNATLVKT ASQSTLDYIA ERITSVRWIG LSRQNSKKDW MWEDSSVLRK NGINLSGNTE ENMNCAYLHN
GKIHPASCKE RHYLICERNA GMTRVDQLL

N-glycosylation sites

Potential sites Identified Peptide*1
Position Sequon Position Sequence Unique or Shared
67 NLS
120 NLT 119 - 139
RNLTWEESKQYCTEQNATLVK
Shared ( 2 )
119 - 127
RNLTWEESK
Shared ( 2 )
134 NAT 119 - 139
RNLTWEESKQYCTEQNATLVK
Shared ( 2 )
128 - 139
QYCTEQNATLVK
Shared ( 2 )
184 NLS
Liver Liver: b4GalT-I(+/+) Liver: b4GalT-I(-/-) Lung
AAL RCA120 RCA120 RCA120 ConA
         
   
   
 
   
   
   
         
*1:   _:Potential Sequon     :Asn (glycosylated)     :Gln (deaminated:pyroGlu)     :Met (oxidized)     :Cys (carbamidomethylated and deaminated)

External Links

Publications

Sugahara D, Kaji H, Sugihara K, Asano M, Narimatsu H Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach Sci Rep 2012;2(): PMID:23002422
Kaji H, Shikanai T, Sasaki-Sawa A, et al Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB J Proteome Res 2012;11(9):4553-4566 PMID:22823882
Kaji H, Yamauchi Y, Takahashi N, Isobe T Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site--specific stable isotope tagging Nat Protocols 2007;1(6):3019-3027 PMID:17406563

Entry information

Entry version 2016-12-05
protein sequence version 2016-12-05
Entry status Latest version
Entry history

create : 2016-12-05